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Abstract Earth systems are nearing a global tipping point, beyond which the dynamics of biological communities will become unstable. One major driver of instability is species invasion, especially by organisms that act as “ecosystem engineers” through their modification of abiotic and biotic factors. To understand how native organisms respond to modified habitat, it is essential to examine biological communities within invaded and non‐invaded habitat, identifying compositional shifts in native and non‐native taxa as well as measuring how modification by ecosystem engineers has affected interactions among community members. Using dietary metabarcoding, our study examines the response of a native Hawaiian generalist predator (Araneae:Pagiopalusspp.) to habitat modification by comparing biotic interactions across metapopulations of spiders collected in native forest and sites invaded by kāhili ginger. Our study shows that, although there are shared components of the dietary community, spiders in invaded habitat are eating a less consistent and more diverse diet consisting of more non‐native arthropods which are rarely or entirely undetected in spiders collected from native forest. Additionally, the frequency of novel interactions with parasites was significantly higher in invaded sites, reflected by the frequency and diversity of non‐native Hymenoptera parasites and entomopathogenic fungi. The study highlights the role of habitat modification driven by an invasive plant in altering community structure and biotic interactions, threatening the stability of the ecosystem through significant changes to the biotic community.